First, I apologize if this has already been reported, but nothing came up when I used the search feature just under the E:WoM banner. 

A problem that has emerged for me since patching to 1.06 is that the colours of all factions are completely FUBAR.  I only ever use the prefab factions, and have tested for both prefab and custom sovereigns.  Here are my observations:

1. Buildings.  The buildings will always be the correct colour for the faction.  Altar will be red, Guilden will be yellow, etc.

2. Sphere of Influence.  My border will only and always be medium blue, and all of the other factions have the same pale yellow border.  It doesn't matter which faction I play, or which leader; this always happens, no matter what.  If I click on a unit or city within the boundaries of another faction, the banner at the bottom will display the correct colour for that faction.  Sometimes a single city will have the correct colour of boundary, but typically only if it is isolated from the border of the rest of its empire/kingdom, and only until the two borders merge. It did not always use to be this way; prior to 1.06, it worked (mostly) well, with the exception of the random UI glitching the name of random cities from time to time.    Given that this happens in every conceivable combination of sovereign/faction/equipment colouring, I'm wondering if maybe this is supposed to happen. 

On a side note, my dynasty tree frequently stacks all of the portraits on my sovereign.  Don't think that's supposed to happen either.

Thanks for listening!  Let me know if you need a debug.err file or whatnot.
allos autos

PS. Thanks for all of the hard work, Stardock! I, for one, really appreciate it!