Add a blank .png file to the folder where your dock images are kept called "titleblank.png"..
2. Add the following line of code to your .ini file:
Image = tileblank.png
ResizeIconByPercent = 80
OffsetIconByPercentX = 75
OffsetIconByPercentY = 50
you better make sure your blank png is named tileblank.png if your line in the code is calling for tileblank.png...
It seems to me that your running indicators are in the exact same spots on both views there. It's the dock that has moved. How big is the running indicator image pixel wise?
Let me see if I understand this. The icons are too close to the top edge of the dock? Put a OutsideBorderTop tag in there and set the number to 5. Adjust from there. That will get your icons away from the indicator. But I think maybe your indicator is too far down into the dock. The second shot of the dock looks good, the icons are setting nicely between the top and bottom. The indicator is the problem. Try an indicator with a smaller dimension. I usually go with 20x20 when I use them.
The OffsetIconByPercentX line may work well for the top dock, but it also affects the sides and bottom and it may not work out right on those ones. The best thing to do is the OutsideBorderTop tag because that can be set different for each docks position on the screen (Left would be OutsideBorderLeft etc.)
Not to shut Mirsguy down or anything as I use the tileblank code in all my zoomers, but mostly so I can resize the icons to fit into some of the more constraining docks.