If you could be more specific about where exactly you are seeing the problem, that would be helpful in me fixing the problem..
For instance, under what circumstance are you unable to obtain loot? I just loaded your save and stepped on a goodie hut with Varda's army, and verified (by looking at my inventory before and after) that the loot from the goodie hut was added to the inventory.
Similarly, what specifically, (in this save that you provided), are you unable to enchant? Without knowing any details, I tried enchanting Varda's chain boots with some dragonscale hide, and it worked just fine.