They may have been destroyed by wandering monsters. It's not out of the realm of possibility. They're supposed to start with at least one super strong guardian unit though....
End of Nenjin's quote
I guess so, but the 1st turn hadn't started yet and I get multiple messages that the factions are gone.
I started over again. Now, during character creation, all of the equipment avaliable to the custom wizard is grey'd out. Also, when I try to cycle through various faces on my sovereign, all of the new type of face boxes stay highlighted (the face looks rather plan, but I currently have 6 different types of faces selected, including ones from different races and different sexes.)
Going to try quitting out the program and restarting a new game, perhaps something is borked the program out.
Edit: The full game restart seems to of fixed the problem. I still have the save of Janusk's army with the pop up messages of the minor factions being toast, if it would help.