I wonder if people, who installed the mod that patched parts of the game, have remembered to remove them.
Delete all HF107_ files in your /Mods/ folder before starting a new game with the 1.08 patch.
NOTE: Remember to delete all files starting with HF106_ from your /Mods/ folder if you were using the previous version of the Bugfix mod.
** Stardock, you may want to consider adding a note about checking mods after installing a mod. Otherwise do something similar like WoW does with addons or Firefox does with extensions - provide an optional element to allow mod authors to put in a target version and ignore those entries once the game has been updated.