I also see this issue, but I never use auto-resolve - it just happens randomly when I tell my hero to use the Rain of Arrows ability.
I would say it happens more often than not, but definitely not every time I use the ability. I have not noticed similar effects with other abilities (I have about 30 hours of playtime).
I don't have facts to back this claim up, but It seems to me like the bug is less likely to happen the first time I use the ability in a session, and more likely to happen if the game has been running for a while.
I'm running whatever the default version of the game available on steam is.