Just tested this in-game, first with a custom Altar faction from my current playthrough, then with the stock Altar faction. Henchmen, and all of their pre-made templates, are working in .92. You could try to use ctrl-r to max your research as a test, then see if they are buildable.
As for the spellbooks, the spell schools for henchmen are very limited, but you can give them the full complement of spells via the Decalon or found spellbooks.