Some of these are pretty old, but still annoying.

A.  When I load a game, objects in the fog of war (crystals, shards, etc, etc) don't always appear on the map properly for a while.

B.  When I convince a sovereign to surrender, the last city they were stationed in disappears, but the terrain it occupied is still listed as "City", when i hover the mouse over it, and I cannot send in a new pioneer to found a new city there, because a city cannot be founded on city type terrain.  It was pretty annoying to lose some of the better city spots I have seen due to this bug.

C. At one point, all of the water disappeared on the map I was playing on.  I had to completely close and re-open FE to fix it (saving and reloading didn't do the trick).  I believe this was also the point that some wolves appeared pretty much out of nowhere, in the dry lake bed.  I now have some aquatic wolves.  Even now that water is back, when I zoom out to the cloth map, they appear again, chilling in the water. 

D.  Aquatic wolves would be pretty cool, huh?  Maybe that's an Easter egg, and not a bug.  What's my prize?!

Here is a link to a saved file I uploaded due to a bigger issue I was having with the arena, but the crazy wolves should be see-able for anyone who's interested.  They aren't too far from my main hero stack, just scroll out to the cloth map to have an idea where they are hiding.  : http://dl.dropbox.com/u/59263671/Broken%21.EleSav

E.  Random mixing of "Level up/Loot/Level up/ Quest progress" Screens.  This actually caused the problem I referred to above with the arena.

F.  I have seen on the forums people saying the XP traits don't seem to work, but from my experience (with a hero who started with levels of Potential??, the individual XP raising trait, and swiftly got a third), even though the battle reports aren't saying anything about it, the potential trait seems to be working.  This hero started with less XP than my sovereign, but now is a good half a level ahead at L 19 to the sovereigns 18.  He has actually missed a few fights she was in, but has never fought without her there, so I'm sure it's not an issue of him having received the XP elsewhere.  (Also, stack of doom for the win!)

I do not have nearly the patience to see if the ones that change the entire army's XP are working or not.

 G.  one of the mid level quests has some really messed up text.  I think the name starts with a V?   Should have recorded it, didn't sorry.

Alright, that's most of the bugs I have seen, I'm sure there are more that I have seen but forgotten.  Thanks for making a good game, keep working on these bugs and it could become a very good game (Maybe even great)!