I have noticed before that sometimes a valid settlement square (or a few of them in an area) does not display its resources, even when there are nearby squares that do display their resources. The only way I knew it was a valid settlement square was that when my settler was overtop of it, the settle button was not greyed out.
I had intended to report this, and created a save file that would replicate the problem, except when I loaded from save all the squares showed their resources, so it didn't actually replicate the problem.