http://dl.dropbox.com/u/16872572/debug.err
This was with a custom faction and custom sovereign. Also, there is a spam when creating a sovereign if you run out of points when choosing the starting options (such as green thumb). You can decrease one of your stats (strength for ex.) and get 3 points back (I think that's how many). You have one point left over so you can put it back in the stat and it will put the stat back to where it was before you decreased it.